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Research-Stack/0-Core-Formalism/lean/Semantics
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Brandon Schneider aba1fba7ad fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 
Security & correctness fixes from full adversarial review:

Lean (7 fixes):
- FixedPoint.lean: guard false theorem with n > 0 precondition
- QFactor.lean: remove double-scaling error in energy decrease
- AVMIsa/Step.lean: implement addSatQ16/subSatQ16 primitives
- BraidEigensolid.lean: fix crossStep second output argument swap
- SSMS.lean: complete ACI preservation proof (with rounding caveat)
- HouseholderQR.lean: add n > 0 precondition to spectral theorem

Verilog (7 fixes):
- q16_lut_core.v: fix multiply shift (16 → 32 bits)
- q16_lut_top.v: fix valid bit (0 → 1)
- cff_accelerator.v: fix SHA-256 padding (len < 448 check)
- research_stack_top.v: fix trigger aliasing (unique counters)
- Blitter6502OISC_small.v: fix address width (15 → 16 bits)
- spatial_hash_bram.v: add OOB write guard
- tmr_oepi_safety_fsm.v: fix double-increment race

WGSL (6 fixes):
- shaders.wgsl: atomicAdd for concurrent writes
- frustration_qubo.wgsl: double-buffer + CAS loop
- braid_fft.wgsl: workgroupBarrier synchronization
- burgers_scar_filter.wgsl: atomic E_bins array

Rust (9 fixes):
- thermodynamic.rs: Arc::from_raw → Arc::clone (double-free)
- thermodynamic.rs: Box::into_raw → Box (leak)
- tools/src/lib.rs: shell injection → shlex.quote
- ene-node/src/lib.rs: LRU caps, constant-time HMAC, peer caps

Python (6 fixes):
- similarity/__init__.py: pickle.load → RestrictedUnpickler
- AI-Feynman: torch.load → weights_only=True (14 calls)
- fetch_arxiv.py, fetch_s2.py: eval → ast.literal_eval
- topology.py: os.system → shutil.copy2
- SSH pipe: os.system → base64 pipe

Build: lake build 3572 jobs, 0 errors
2026-05-31 23:38:03 -05:00
..
.github/workflows initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
Ancillary Track remaining source and documentation inventory 2026-05-11 22:18:31 -05:00
blackboard initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
build-static initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
Core Address fixed-point review findings 2026-05-05 21:26:18 -05:00
ExtensionScaffold chore: commit accumulated working tree changes 2026-05-30 00:10:02 -05:00
legacy chore: commit accumulated working tree changes 2026-05-30 00:10:02 -05:00
OpenWormKernelFieldBenchmark initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
Quarantine initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
scripts initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
Semantics fix(adversarial-review): resolve 35 critical coding bugs across 8 subsystems 2026-05-31 23:38:03 -05:00
.gitignore initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
AdaptivePrecision.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
AdaptivePrecision.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
AdaptivePrecision.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
AGENTS.md docs: update AGENTS.md — BraidDiatCodec shim + bridge modules 2026-05-30 13:30:55 -05:00
BindServer.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
BindServer.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
BindServer.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
Biology.lean Semantics: modularize quaternion, resolve circular dependencies, and eliminate float operations 2026-05-19 14:29:41 +00:00
CombinatorialPrecision.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
CombinatorialPrecision.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
CombinatorialPrecision.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
debug_eval.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
EQUATIONS_EXTRACTION.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
EvolutionaryTransfold.lean Track compiling Lean source slice 2026-05-11 22:14:31 -05:00
EvolutionaryTransfoldExpanded.lean Track compiling Lean source slice 2026-05-11 22:14:31 -05:00
ExtensionScaffold.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
EXTERNAL_REVIEW_REQUIREMENTS.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ExtremeParameterTestEval.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ExtremeParameterTestEval.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
ExtremeParameterTestEval.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
ExtremeParameterTestEval_output.txt initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
F01_Q16_16_FixedPoint.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
F01_Q16_16_FixedPoint.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
FPGAExtraction.lean Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
FPGAExtraction.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
FPGAExtraction.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
GenerateLUTMain.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
GenerateSparklePhiS3C.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
GenerateSparklePhiS3C.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
GenerateSparklePhiS3C.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
lake-manifest.json Consolidate research stack updates 2026-05-05 21:09:48 -05:00
lakefile.toml feat(rrc): 278-equation corpus — AVM sole output boundary, RRC classifier feeds it 2026-05-26 22:23:56 -05:00
lean-toolchain Consolidate research stack updates 2026-05-05 21:09:48 -05:00
Main.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
Main.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
Main.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MANIFOLD_NETWORKING_V0.1_ACCEPTANCE.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ManifoldCompressionAgnostic.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
ManifoldCompressionAgnostic.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
ManifoldCompressionAgnostic.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MATH_MODEL_MAP.tsv initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MetadataOverheadBudget.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MetadataOverheadBudget.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MetadataOverheadBudget.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MetaManifoldLanguageMerging.lean Consolidate research stack updates 2026-05-05 21:09:48 -05:00
MetaManifoldLanguageMerging.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MetaManifoldLanguageMerging.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MinimumNeuralCompression.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MinimumNeuralCompression.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MinimumNeuralCompression.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MOIMBenchmarkMain.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
MOIMBenchmarkMain.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
MOIMBenchmarkMain.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
NominalParameterTestEval.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
NominalParameterTestEval.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
NominalParameterTestEval.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
OpenWormBenchmark.lean Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
OpenWormBenchmark.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
OpenWormBenchmark.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
OriginProtocol.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
OriginProtocol.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
OriginProtocol.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
PHASE_COMPLETION_SUMMARY.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
PUBLIC_BENCHMARK_RELEASE.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
PUBLIC_THEORY_RELEASE.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
PurifyMain.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
QuizTest.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
QuizTest.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
QuizTest.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
README.md initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
SearchServer.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
SearchServer.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
SearchServer.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
Semantics.lean feat(lean): complete goldenContractionEnergyDecrease proof + PIST predictions pipeline v2 2026-05-27 12:40:16 -05:00
Semantics.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
Semantics.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
SIGNAL_ANALYSIS_GENETIC_IMPLICATIONS.md Track compiling Lean source slice 2026-05-11 22:14:31 -05:00
TangNano9KEmitter.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
TangNano9KEmitter.lean.pist collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
TangNano9KEmitter.lean.pist.meta collapse: prover orchestration layers, FAMM verilator harness, swarm topological prober, spec sheets, virtual FPGA system tests, merge conflict resolution 2026-05-06 23:42:01 -05:00
test.lean initial: sovereign research stack (consolidated, weightless, and lfs-optimized) 2026-05-04 18:11:36 -05:00
TestFintype.lean Expand devcontainer with full Python stack, add MCP servers (Notion/AWS), strengthen Lean theorems 2026-05-19 01:52:14 -05:00
TRANSFOLD_COMPARISON.md Track compiling Lean source slice 2026-05-11 22:14:31 -05:00
TransfoldEquation.lean Track compiling Lean source slice 2026-05-11 22:14:31 -05:00
TransfoldEquationBaseline.lean Track compiling Lean source slice 2026-05-11 22:14:31 -05:00
UrbanAdaptationTransfold.lean Track compiling Lean source slice 2026-05-11 22:14:31 -05:00

README.md

Semantics