Research-Stack/6-Documentation/wiki/Glossary.md

Glossary

Source: ../docs/GLOSSARY.md · ../docs/WEIRD_CONCEPTS_GLOSSARY.md · Concept-Archive · ../docs/VOCABULARY_LOCK.md · ../CONCEPTS.md

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Core Formalism

Term	Definition
bind	The single universal primitive: (A × B × Metric) → Bind A B. All algorithms collapse to this. Five allowed classes: informational, geometric, thermodynamic, physical, control.
Q16_16	32-bit fixed-point (UInt32, 0x00010000 = 1.0). Mixed integer + fraction. Last-resort only.
Q0_16	16-bit fixed-point (UInt16), pure fraction [-1, 1]. Default for dimensionless quantities.
Q0_64	64-bit 0D scalar [0, 1). Universal scalar for cross-substrate communication.
FixedPoint	Formal module (Semantics.FixedPoint) defining both Q16_16 and Q0_16 arithmetic.
AMMR	Algebraic Merkle Mountain Range — hierarchical cryptographic accumulator over equation forest nodes.
AVMR	Adaptive Vector Manifest Roll-up — hierarchical summary of vector manifolds across substrates.
O-AMMR	Ordered AMMR — AMMR with explicit dependency ordering on the equation DAG.
BraidField	Path-sensitive field B(t) through which information carriers are rotated to expose phase/charge instability.
BracketedCalculus	Gap-conserving bound calculus: ⟨l, u, v, g_l, g_u⟩. Substrate #35.

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Geometry

Term	Definition
PIST	Perfectly Imperfect Square Theory — witness/audit surface. States: (k, t) ∈ ℕ². Invariant: mass conservation.
DIAT	Dynamic Integer-Address Transform — shell coordinate system for energy cell quantization.
NUVMAP	Non-Uniform Variable Mapping — 2D spectral projection (u, v).
GWL	Gravitational-Wave-Like topology — 5-factor rotational coupling geometry (θ, φ, τ, χ, proximity).
S3C	Shell/Topological Codec — energy cell quantization into n² + m integer shells.
SSMS_nD	Nested self-similar manifold shell — recursive fractal dimension descent.
Goxel	Geometric voxel — N-space shape primitive.
SolitonTensor	Nonlinear persistent wave on the manifold with conserved identity (Sine-Gordon energy).
TorsionalPIST	Quaternion-valued PIST extension: (q₁, q₂, q₃) ∈ ℚ³.

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Compression

Term	Definition
GCCL	Geometric, Cognitive, and Compression Law — the unified law stack spanning all substrates.
MISC	Manifold-Invariant Shell Compression — compression via shell coordinate encoding on the manifold.
GENSIS	Genetic-Natured N-Space universal encoding substrate — MISC extended with biological/genetic coding systems.
DeltaGCL	Differential GCL — compact representation of differences between successive manifold states.
PTOS	Photonic Topological Optical Storage — photon-pulse-based read/write of crystal substrate topology.
KOT	Kinetic Operation Token — accounting layer for action cost. Every transformation pays.
VLE	Variable-Length Encoding — adaptive symbol encoding based on frequency/basin statistics.
ΔφγKλ	Delta-phase-gamma-kappa-lambda — complete differential encoding across phase, gamma, curvature, and wavelength.

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Biology / Neural

Term	Definition
SpikingNeuron	Izhikevich model: (v, u, I) with membrane potential dynamics.
STDP	Spike-Timing-Dependent Plasticity: Δw = A·exp(-Δt/τ).
GeneticCode	Codon → amino acid mapping with 30+ variant tables. 64 codons, 20+ AAs.
CodonOptimization	Codon reassignment driven by CAI (Codon Adaptation Index).
DNAmethylation	Epigenetic mark — methyl group addition to cytosine.
HistoneMod	Histone tail modification encoding regulatory state.
Prion	Misfolded protein acting as conformational template — Reverse-Sisyphus structural memory.
Neural Type Eigenvector Coverage	Coverage-driven morphology/evidence graph where broad neuron-type features become a principal vector used to rank biological analogues by measured efficiency gain, provenance, and residual risk.
Locally Adaptive Contact Materials	Cooperative anisotropic layered flip-tile material/control patches held near a bounded critical phase boundary so local charge/field inputs can alter stiffness, adhesion, damping, friction, texture, or shape while preserving contact authority.
Fractal Extendable Hair Field	Nested active micron-scale hair/fibril field over a tensioned material skin; branches extend, orient, stiffen, and retract to multiply dry adhesion or microhook contact while preserving detachability.
Recovered Session Material Concepts	Material-primitives bundle mined from a recovered local chat: MXene nanoscrolls, resonant SLS tubules, conductive valence matrices, magnetic labyrinths, magnetoelectric laminate capsules, piezo receipts, ferrite/carbon doping, and SDR void hashes.
Structural eFuse Surface	Passive load-bearing geometry/material state that trips a measurable signal under unsafe strain, misalignment, flux imbalance, conductivity jump, or RF-signature drift.

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Thermodynamics

Term	Definition
Trixal	Multi-axis thermodynamic quality state: (thermal, work, irrev). Compression modeled as a heat engine.
HomeostaticGovernor	Control dynamics: pressure evolution p_{t+1} = γ·p_t + s_t.
DynamicCanal	Adaptive canal that deforms under pressure.
Landauer	Principle: minimum energy kT·ln2 per bit erasure.
HyperFlow	Navier-Stokes on the manifold: ∂F/∂t = ν∇²F - (F·∇)F + ∇p.
F-Number COUCH	Finite COUCH route-pressure proxy: F_COUCH(κ) = avg_curvature_milli(κ) + max_curvature_milli(κ) + FAMM_frustration_milli; current high-F threshold 18500.
U-Rotated COUCH Value	Finite COUCH projection along curvature and coupling: U_rot(κ) = C_avg_milli(κ) + κ_milli * U_norm_milli(κ) / 1000.
Y-Axis O-Step COUCH Container	Finite COUCH packet {O_steps, U_value, R_value} where U_value = U_rot(κ) and R_value = 1000 is constant.
Route-Pressure COUCH Gate	Operational COUCH pressure P_COUCH(κ) = F_COUCH(κ) + U_rot(κ) - R_value, mapped to local, atlas, or reject routing actions.
LNMF / Loch-Nessie-Monster Filter	Hidden-basin routing filter: Loch(L) = internal/(1+leakage) * A_L, nE_i(L) = A_{L,i} * rho_{L,i} * Scar_i(L), `M(L) =
Monster Filter Assignment	Assignment layer over LNMF outputs: Tree Fiddy/BHOCS owns archive commit monsters, Loc Nes owns hidden recurrence witnesses, and quarantine remains explicit.
English Word Bonding Equations	Speculative-materials bridge where words such as CAGE, BRIDGE, CHAIN, SCAR, SALT, and RING name finite bonding/routing operators. Mnemonic only; not a chemistry claim.
Reactive Semantic Perturbation / Fluorinated Semantics	Discovery method that permits highly reactive or absurd semantic inputs, then admits only outputs that survive typed gates, receipts, failure modes, and quarantine.
CognitiveLoad	5-component load model: (L_I, L_E, L_G, L_R, L_M).
Reverse-Sisyphus	Property: dC/dt = f(W, C) AND E[W(t+Δ)] < E[W(t)] — work reduces future work.

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Security

Term	Definition
AngrySphinx	Exponential energy asymmetry: E_attack = n ⟹ E_solve ≥ 2^n. NaN boundary at F → 0.
FAMM	Frustration-Aligned Memory Management — stores failed/partial/successful routes as basin/scar signals.
FrustrationTensor	Triadic frustration tensor (i, j, k) storing route constraint violation.
NaNBoundary	Limit surface where frustration metric F → 0, returning undefined.
PodAccumulator	Distributed attestation accumulator collecting PIST witness signatures.
Waveprobe	Hysteretic mode-switch security sensor with barriers B_lock > B_warn > B_recover.

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Semantics

Term	Definition
CrossDimensionalFilter	Semantic filter operating across dimensions via 12 primal primes.
SemanticPrime	One of 12 irreducible meaning atoms.

The 12 Semantic Primes:

#	Prime	Description
1	Identity	Self-reference, what a thing is
2	Agent	Active entity, actor
3	Object	Passive entity, thing acted upon
4	Action	Event, process, doing
5	State	Condition, property, mode
6	Relation	Connection, link, between
7	Good	Positive valence, desirable
8	Bad	Negative valence, undesirable
9	Want	Desire, intent, goal
10	Know	Knowledge, belief, awareness
11	Place	Location, space, where
12	Time	Temporal, when, duration

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Meta

Term	Definition
Metatype	Trajectory quality invariant — formal classification of agent trajectory behavior patterns.
UMUP-λ	Universal Manifold Update Protocol — λ-parameterized update rule across all manifolds.
IRP	Invariant Receipt Protocol — auditable proof that a transition preserved the declared invariant.
SettlementState	Ladder: SEED → FORMING → STABLE → CRYSTALLIZED → COMPRESSED.
PromotionLadder	BEAUTIFUL_PROVISIONAL → CALIBRATED_ENGINEERING_DELTA → REVIEWED → VERIFIED.
BLS	Bounded Lawful Surface — set of transitions expressible under declared constraints.
FNWH	Formal Non-Wave Harmonic — underlying harmonic framework for Burgers/Braiding proofs.

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Infrastructure

Term	Definition
ENE	Endless Node Edges — distributed credential and node management with gossip protocol.
OTOM	Ordered Transformation & Orchestration Model — unifying label for all Research Stack work.
NII	Native Integer ISA — executable control layer (Semantics.ISA).
Substrate	A mathematical layer with: state space, metric, transition, invariant, guard.
FPGA_Warden	FPGA-based Warden node executing stark_trace validation on burned DAG-LUTs.
CacheSieve	5×2-bit symbol classifier (PASS/HOLD/REJECT).
MORE_FAMM	Capability-based memory isolation via BRAM segments.

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The 36 USTSM Substrates

#	Substrate	Invariant
1	PIST/DIAT Shell	mass conservation
2	GWL Rotational	dE/dt ≤ 0
3	AngrySphinx	E_solve ≥ 2^n
4	CrossDimensionalFilter	semantic prime preservation
5	SSMS_nD	self-similarity invariant
6	FAMM Frustration	frustration monotonic
7	SolitonTensor	soliton identity
8	TorsionalPIST	quaternion norm
9	HybridTSMPISTTorus	positive mass only
10	HyperFlow	fixed point convergence
11	Q16_16 FixedPoint	totality (no NaN)
12	Q0_64 0D Scalar	stay in [0,1)
13	Trixal Thermodynamic	irrev < threshold
14	Cognitive Load	efficiency ≥ 0
15	Homeostatic Governor	pressure bounded
16	Genetic Code	codon validity
17	Genomic Compression	field invariant
18	Codon Optimization	CAI monotonic
19	Delta GCL	delta(m,m) = empty
20	Spiking Neuron	v < 30 mV until fire
21	STDP Synaptic	bounds conserved
22	Manifold Networking	curvature bounded
23	Quantum Geometry	observational fit
24	GWL Throat	holonomy bounded
25	Braid Field	mergeDebt ≤ threshold
26	Adaptation	isLawful, params in range
27	DynamicCanal	width ≥ 0
28	CompressionMechanics	order contracts
29	PIST Bridge	O(1) per step
30	Waveprobe	B_lock > B_warn > B_recover
31	MasterEquation	probability sum = 1
32	CompressionControl	canonicalized
33	CompressionEvidence	energy decomposes
34	ASICTopology	operation admissible
35	BracketedCalculus	g_l + g_u = u − l
36	CacheSieve	sieve invariant

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Quick Reference: Framework Hierarchy

GCCL = Law Stack (what must be preserved)
  │
  ├── MISC = Compression Engine (how it runs)
  │     Uses: PIST shells, GWL coupling, Cognitive Router, Trixal Verify
  │     │
  │     └── GENSIS = N-D Extension (genetic codes + hypercubic shells)
  │
  └── USTSM = Substrate Census (36 substrates under one Q0_64 scalar)

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Quick Reference: Data Flow

Raw Data → PIST Remap → GWL Coupling → Cognitive Router → Delta GCL → Trixal Verify → Homeostatic Update → Output + Receipt

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For the full authoritative glossary with additional entries, see ../docs/GLOSSARY.md.