SilverSight/AGENTS.md

# AGENTS.md — SilverSight

**SilverSight is the clean-slate rebase of the Research Stack.**

## Repository

**GitHub:** `https://github.com/allaunthefox/SilverSight`
**Local clone:** `/home/allaun/SilverSight`
**Formal modules:** `formal/SilverSight/`

## Research Stack

`~/Research\ Stack` is a **read-only archive**. Never write to it. It is the regression oracle — if a closed theorem there covers the same territory as new SilverSight work, the SilverSight proof must recover it as a corollary.

## Rules

1. **SilverSight is the ONLY target for new formal work.** All new Lean code goes here. Do NOT modify `~/Research\ Stack/` under any circumstances.

2. **No cross-imports from Research Stack.** SilverSight depends on Mathlib only. If something from Semantics is needed, port it cleanly.

3. **No `sorry` in committed code.**

4. **No `Float` in compute paths.** Use `Q0_16` or `Q16_16`.

5. **No `native_decide` unless it is the only tactic that closes the goal.** Use `norm_num`, `omega`, `simp`, `decide`, or explicit proof terms first. Document why `native_decide` is required when used. Exception: finitely decidable existence claims (e.g., N=8 necessity) are the canonical use case.

6. **Build gate:** `lake build SilverSight` must pass (0 errors).

7. **Every new module needs:**
   - `@[simp]` theorems for key computations
   - `#eval` witnesses with expected output in comments
   - A docstring explaining the module's purpose

8. **The claim manifest** lives at `6-Documentation/docs/claims/manifest_v1.json`.

## Rotation Protocol (SilverSight ↔ BioSight)

Every work cycle runs three passes in order:

```
1. BioSight scan:
   - Run phi.encode on the active equation batch
   - Collect (τ, δ) distribution from phi.ast_parse
   - Flag any phi.consistency ADMIT/QUARANTINE decision lacking a SilverSight receipt
     → these are rotation triggers: pending SilverSight gates

2. SilverSight pass (triggered by scan):
   - Formalize the flagged gate (≤ 10 lines from existing Schema/WireFormat/Receipt/Bind)
   - lake build must pass
   - Emit receipt JSON

3. BioSight integration:
   - phi.consistency consumes the receipt; decision is now SilverSight-backed
   - Update dag/graph.md node from ⚪ to 🟡/🟢
```

**Archive regression check (every cycle):** If Research Stack has a closed proof covering the same territory as a new gate, BioSight's instance must recover it as a corollary. Failure = framework hole.

## Anti-Drift Multi-Pass

LLM agents drift from the formal spec across sessions. Every decision — no matter how minor — must survive all four passes before it is considered settled:

| Pass | Layer | Authority |
|------|-------|-----------|
| 1 | Python (BioSight phi) | I/O encoding only — no decisions |
| 2 | Lean (SilverSight gate) | Formal authority — closes the decision |
| 3 | RRC pipeline | Cross-repo alignment check |
| 4 | Research Stack oracle | Regression — must recover closed theorems |

**Drift signal:** any Python path making an admissibility or routing decision without a corresponding SilverSight receipt is drift. File it immediately as a pending gate (Pass 2 incomplete).

**Session start protocol:** Before any new formal work, confirm `lake build SilverSight` still passes. Do not trust prior session summaries about build state.

## Root Formal Theorem: N=8 Necessity

The entire BioSight alphabet choice rests on:

```
N = 8 = min { N : Nyquist(N) ∧ Q16_16(N) ∧ DNA-subset(N) }
```

- **Nyquist(N):** N ≥ 2 × max_frequency (antialiasing lower bound)
- **Q16_16(N):** N is a power of 2 (fixed-point arithmetic requirement)
- **DNA-subset(N):** N ≤ 8 (hachimoji alphabet upper bound)

Target: `formal/SilverSight/HachimojiN8.lean` — provable by `native_decide` once the three predicates are defined. This is the root receipt that BioSight's phi.consistency depends on.

## What Belongs Here

- Schema/Layout/WireFormat core (YaFF-inspired)
- Product-type encoders
- Receipt/Bind composition primitive
- DynamicCanal physics (when ported)
- RRC corpus and PIST pipeline (when ported)
- Compression theorems (when ported)

## What Does NOT Belong Here

- Research Stack legacy modules (stay in `Semantics/Semantics/`)
- Python shims (stay in `4-Infrastructure/shim/`)
- Documentation (stay in `6-Documentation/`)
- Extraction JSONs (stay in `extraction/`)

| ID | Research Stack source | SilverSight target | Status |
|----|----------------------|--------------------|--------|
| `nuvmap-port` | `Semantics.InvariantReceipt.Instances.NUVMAP` | `formal/SilverSight/InvariantReceipt/NUVMAP.lean` | ❌ Not started |
| `lambda-threshold` | (no RS source — new theorem) | `formal/SilverSight/PIST/BmcteThreshold.lean` | ❌ Not started |
| `chentsov-core` | (ported) | `ChentsovFinite.lean` | ✅ Complete (3 axioms, 0 sorries) |
| `fisher-rigidity` | (new) | `PIST/FisherRigidity.lean` | ✅ Complete (0 sorries) |

## Current Status

| Module | Status | Sorry |
|--------|--------|-------|
| Schema.lean | Complete | 0 |
| WireFormat.lean | Complete | 0 |
| ProductSchema.lean | Complete | 0 |
| ProductWireFormat.lean | Complete | 0 |
| Receipt.lean | Complete | 0 |
| Bind.lean | Complete | 0 |
| PIST/Spectral.lean | Complete | 0 |
| PIST/FisherRigidity.lean | Complete | 0 |
| PIST/CartanConnection.lean | Complete (NR bracket MC equation) | 0 |
| PIST/YangBaxter.lean | Complete (Layer 2d) | 0 |
| PIST/Tdoku16D.lean | Complete (reflexive convergence 336) | 0 |
| PIST/CrossDomainSynthesis.lean | Complete (Rydberg defect & SC band) | 0 |
| PIST/MultiSurfacePacker.lean | Complete (Lagrangian decision logic) | 0 |
| PIST/UnifiedCovariant.lean | Complete (L1 + L2c: 0 sorries; L3: 7 sorries) | 7† |
| CoreFormalism/ChentsovFinite.lean | Complete (3 axioms) | 0 |
| AVMIsa/Types.lean | Complete | 0 |
| AVMIsa/Value.lean | Complete | 0 |
| AVMIsa/Instr.lean | Complete | 0 |
| AVMIsa/State.lean | Complete | 0 |
| AVMIsa/Step.lean | Complete | 0 |
| AVMIsa/TypeCheck.lean | Complete | 0 |
| AVMIsa/TypeSafety.lean | Complete | 0 |
| AVMIsa/Run.lean | Complete | 0 |
| RRC/Emit.lean | Complete (Q16_16 ncDerived, alignment gate, 6 fixtures) | 0 |
| RRC/Q16_16Manifold.lean | Complete (278 rows, Q16_16 manifold fields) | 0 |
| RRC/ReceiptDensity.lean | Complete | 0 |
| RRCLogogramProjection.lean | Complete | 0 |

† Layer 3 sorries are geometric conjectures (Kähler on ℂℙ⁷, Cartan connection,
  holonomy SO⁰(1,6)) deferred pending Mathlib infrastructure.  Layer 1 (4
  discrete invariants) and Layer 2c (NR bracket MC equation / Yang-Baxter
  integrability) are complete with 0 sorries.

  **Layer 2/2b quarantined** (2026-06-26): goldenEndomorphism, eigensolid_convergence,
  Sidon-orthogonality bypass, and crossingMatrix sections were removed from
  UnifiedCovariant.lean due to incompatible Mathlib 4.30.0-rc2 import paths.
  Their content is preserved in git history and can be revived when Mathlib
  dependency paths stabilize. See git log of UnifiedCovariant.lean.

## CartanConnection — NR Bracket MC Equation (Gate C, Layer 2c)

**Purpose:** Proves d_CE μ = 0 (equivalently [μ,μ]_{NR} = 0) for the Sidon
crossing matrix 2-cochain μ ∈ C²(V,V).  Verified on all 7³ = 343 basis triples
by `native_decide`.  Together with YangBaxter.lean, this closes the breakglass:
`[μ,μ]_{NR}=0 ⇒ YB integrability`.

**Key theorems:**
- `Jacobiator_basis_all` — Finset filter emptiness over 343 triples
- `Jacobiator_basis_zero` — vanishes on any single basis triple

## YangBaxter — Yang-Baxter Integrability (Layer 2d)

**Purpose:** Proves that the 2×2 Sidon crossing block B = [[39/256, 1/7],
[1/7, 39/256]] generates R = B⊗B satisfying R₁₂ R₁₃ R₂₃ = R₂₃ R₁₃ R₁₂.

**Key fact:** Equality holds by alpha-equivalence (r↔s renaming).  No tactic
needed (`rfl`).

## Layer 2 Architecture

```
Layer 1 (DiscreteFoundations):   I₁–I₄ invariants, Sidon uniqueness
Layer 2c (CartanConnection):     NR bracket MC equation [μ,μ]=0          ← HERE
Layer 2d (YangBaxter):           Yang-Baxter integrability               ← HERE
Layer 2b (QUARANTINED):         Eigensolid convergence, matrix norm bound
Layer 2 (QUARANTINED):          Golden endomorphism J²=J+I
Layer 3 (GeometricConjectures):  Kähler on ℂℙ⁷, Cartan connection, holonomy
```

The Sidon crossing matrix has 4 disjoint 2×2 blocks (pairs 0↔1, 2↔3, 4↔5,
6↔7) with cross-block entries zero by Sidon address uniqueness (I₄).  This
block-diagonal structure makes all NR cross terms vanish structurally —
the operadic grafting tree is totally disconnected.

## FisherRigidity — Parabola Focal-Chord to Fisher-Rao Bridge

**Purpose:** Bridges parabola focal-chord perpendicularity (s₁·s₂ = -1) to Fisher-Rao geometric rigidity and Hachimoji eigensolid braid dynamics.

**Key structures:**
- `ConjugatePair` — slope pair encoding perpendicularity
- `isOrthogonal` — Fisher orthogonality vanishing predicate (s₁·s₂ = -1)
- `eigensolidSpectralGapRaw` — 9984 (0.152 normalized), above 1/7 threshold

**Eval witnesses:**
- `parabolaConjugatePair (ofRawInt 65536)` → { slope_large := 158217, slope_small := -27147 }
- `eigensolidSpectralGapRaw` → 9984
- Normalized: 9984/65536 ≈ 0.152 > 1/7 ≈ 0.143 (proven via `spectralGapIntCompare`)

## BMCTE Eigensolid Threshold (p/N = 1/7)

**Result:** λ = exp(-p²/N) → 0 at threshold confirms theoretical prediction

**Implementation:**
1. NUVMAP sparse rollup (`extension_v2_chunked.py`) - saves state per step
2. Spectral witness (`PIST/SpectralWitness.lean`) - computes spectral profile
3. NEON spectral driver (`nuvmap_spectral_driver.py`) - verified 9984 gap value

**Status:**
- λ(eigensolid) = 0 confirmed via formula
- Spectral gap trivially equals input matrix diagonal values (needs parametric sweep)
- TODO(lean-port): NUVMAP module not yet ported to SilverSight

**Files:**
- `experiments/bosonic_continuous/*.json` — receipts
- `formal/SilverSight/PIST/SpectralWitness.lean` — spectral witness
- `experiments/graph_erdos_renyi/*.py` and `*.png` — visualization (note: 1/n ≠ 1/7 thresholds)

## MCP Tools Available

| Tool | Module | Purpose |
|------|--------|---------|
| `gemma-lean-port.find_todo_sorries` | tools-scripts/llm/gemma_lean_port_harness.py | Find TODO(lean-port) theorems |
| `gemma-lean-port.port_theorem` | tools-scripts/llm/gemma_lean_port_harness.py | Generate + validate Lean proofs via Gemma4-12B |
| `loogle-search.loogle_search` | (planned) tools-scripts/mcp/loogle_mcp.py | Search Lean/Mathlib symbols |

## MCP Configuration

Add to `~/.config/opencode/mcp.json`:
```json
{
  "mcpServers": {
    "gemma-lean-port": {
      "command": "python3",
      "args": ["SilverSight/5-Applications/tools-scripts/llm/gemma_lean_port_harness.py"]
    }
  }
}
```

Env vars:
- `GEMMA_URL` — Gemma endpoint (default: http://127.0.0.1:8081/v1/chat/completions)
- `GEMMA_MODEL` — model name (default: gemma4-12b)

## Baker Analogue Integration

The VCN-FAMM-Sidon system is a Baker-style transcendental framework where:
- Sidon addresses = injectivity constraints
- Collapse functional Λ = ∑ wᵢⱼₖₗ log(aᵢ + aⱼ)  
- Scar energy Ω = ∑ scar.pressure
- Theorem: |Λ| ≥ ε(X) ∨ Ω > 0 (rigidity OR scar emission)

## ncDerived Architecture (2026-06-29)

### Negative Control Witness
```
CSV axioms (ncObserved, residualRisk, scaleBandDeclared, weakAxesNames)
    │
    ▼
ncDerived = Q16_16.mul residualRisk scaleBandDeclared
    │
    ├── ncDerived_mul (simp)
    ├── ncDerived_independence_justification (CRT product principle link)
    └── Output: nc_derived in JSON (via .toFloat at I/O boundary)
```

### Q16_16 Values (Fixture Corpus)
| Row | residualRisk | scaleBandDeclared | ncDerived (raw) | ncDerived (float) |
|-----|-------------|-------------------|-----------------|-------------------|
| Clf/Ssrc | 47/100 | 2/5 | 12320 | 0.187988 |
| Stamp_Code | 11/25 | 1/5 | 5766 | 0.087982 |
| Weak control | 27/50 | 1/5 | 7077 | 0.107986 |

### FFS Physical Analog (Pending Validation)
- arXiv:2602.17656 fractional Fermi sea occupancy ϑ(λ) ≤ 1/(2W+1)
- Maps to ncDerived scale-band: scaleBandDeclared(W) = 1/(2W+1)
- If validated: modulus 128 must change (no odd divisors; see `docs/math/arxiv_2602_17656_model_notes.md`)
- Validation: KS test of ncDerived vs 1/(2W+1) quantization (Step 5, Milestone 7b)

### Files Ported (Research Stack → SilverSight)
| File | Status | Notes |
|------|--------|-------|
| `formal/SilverSight/RRC/Emit.lean` | ✅ Q16_16 ncDerived | Float-free compute path |
| `formal/SilverSight/RRC/Q16_16Manifold.lean` | ✅ 278 rows | Q16_16 manifold fields |
| `python/build_manifold.py` | ✅ Q16_16 emission | `lean_q16_16()` helper |

## Beyond Rigorous — Anti-Smuggle Protocol

LLMs produce coherent-looking outputs that are subtly wrong in non-obvious ways. Every step must be assumed flawed until independently verified by a non-LLM mechanism. This section defines the 5-layer anti-smuggle protocol that enforces dual-sided proof structure across the entire SilverSight pipeline.

### Layer 0: Deterministic Reproducibility Chain

Every artifact must be independently reproducible from source. Non-determinism is the primary vector for smuggled assumptions [5].

```
Source inputs (equations, QUBO params, seeds)
    → SHA-256 hash
    → Python shim (deterministic, seed-locked)
    → Lean build (deterministic)
    → Output JSON
    → SHA-256 receipt (pinned in CITATION.cff)

Independent re-run on different hardware must produce identical hash chain.
If not → non-determinism detected → assumption smuggling possible.
```

**Enforcement:**
- All Python shims must accept `--seed` parameter (default 0)
- All random number generators must be seeded explicitly
- Lean `#eval` outputs must be cached and hashed
- Receipt JSON includes `content_sha256` field for all generated artifacts

### Layer 1: Multi-Model Cross-Validation

No single LLM output stream is trusted. Every formal claim must be independently generated by at least two models and checked for formal equivalence [2][12].

```
LLM A → generates Lean theorem
LLM B → generates Lean theorem (same problem, blind)
    ↓
Lean compiler verifies both independently
    ↓
Formal equivalence checker confirms both prove same statement
    ↓
If one passes and the other fails → BOTH are suspect
```

**Enforcement:**
- Critical theorems (Chentsov, FSR, ncDerived) must have dual provenance
- Cross-validation receipt records both source models + Lean build hash
- Surface-form similarity is NOT equivalence — Lean proofs can be cosmetically identical while logically different

### Layer 2: Adversarial Mutation Testing

The verifier itself must be tested. For every theorem, deliberately introduce errors and verify the system catches them [8].

```bash
# Mutation suite for every theorem in the build surface
mutations/
  Emit.lean/
    001_flip_ncDerived_mul.lean    # expected: FAIL
    002_swap_residual_scale.lean   # expected: FAIL
    003_zero_ncObserved.lean       # expected: FAIL
    004_float_instead_of_q16.lean  # expected: FAIL
```

**Enforcement:**
- `python3 scripts/qc-flag/` must pass on clean build AND fail on each mutation
- Mutation coverage = `#mutations_that_cause_build_failure / #total_mutations`
- If a mutation passes the build → the theorem is not specific enough

### Layer 3: Symbolic Oracle Grounding (CAS/SMT)

Lean proofs can be vacuously true or circular. Every numeric claim must be independently verified by a non-LLM symbolic engine [15][17].

```
Lean computes:
    ncDerived = Q16_16.mul (Q16_16.ofRatio 47 100) (Q16_16.ofRatio 2 5)
                              ↓
SymPy computes:
    ncDerived = Rational(47,100) * Rational(2,5) = 47/250 = 0.188
                              ↓
Z3 checks:
    Assert(lean_output == sympy_output ± epsilon)
```

**Enforcement:**
- All `Q16_16.ofRatio` values must have a corresponding SymPy `Rational` verification
- All `native_decide` blocks must have a Z3 SMT-LIB2 equivalent
- CAS verification receipt stored alongside Lean receipt

### Layer 4: Dual-Sided Proof Structure (Domain-Specific)

For the Hachimoji/QUBO pipeline, the quantum encoding must be verified against a classical ground truth. This is the "clear-box middleware" architecture.

```
Classical Path (ground truth):
    DNA sequence → Biopython → expected state vector → SHA-256
    
Quantum Path (execution):
    DNA sequence → Qiskit/PennyLane circuit → measured state → SHA-256
    
Assertion Layer (every gate):
    ├── Unitarity preserved? (‖U†U - I‖ < ε)
    ├── Probability distribution consistent with DNA input?
    └── State vector fidelity ≥ threshold?
    
Cross-Validation:
    ├── Classical expected == Quantum measured (within noise)
    ├── If mismatch → LogicViolation exception → data quarantined
    └── Log: every state transformation serialized to JSONL for audit
```

**Enforcement:**
- Every circuit gate has an assertion wrapper checking unitarity
- Every measurement logs: `{timestamp, gate, input_state, output_state, fidelity}`
- Third-party observer can reconstruct exact state at any time t from logs alone
- Full audit trail = "traceable proof"

### Layer 5: Claim-State Ladder with Non-LLM Gate

Every claim in the system must occupy one of these states. Promotion requires non-LLM evidence at every rung.

| State | Requirement | LLM Role | Non-LLM Gate |
|-------|------------|----------|-------------|
| **BEAUTIFUL_PROVISIONAL** | Coherent hypothesis | Primary author | None |
| **CALIBRATED_ENGINEERING_DELTA** | CAS/SMT verification | Provide code | SymPy/Z3 check |
| **REVIEWED** | Multi-model cross-validation | Dual provenance | Lean compiler |
| **VERIFIED** | Full reproducibility + adversarial tests | Audited | Mutation suite + hash chain |

**Rule:** No claim may promote from PROVISIONAL to DELTA without a non-LLM symbolic verification. No claim may promote to VERIFIED without a passing mutation suite.

### Entry Gate for Every Commit

Before any formal work is accepted:

```bash
1. Deterministic check:    python3 scripts/check_determinism.py  # seed-locked, hash-verified
2. Cross-validation:       python3 scripts/cross_validate.py     # dual LLM provenance check
3. Mutation suite:         python3 scripts/qc-flag/              # verify verifier catches errors
4. CAS grounding:          python3 scripts/verify_with_sympy.py  # numeric ground truth
5. Build gate:             lake build SilverSight                # Lean compiler
```

All five must pass. If any fails, the commit is quarantined and flagged for human review.

### Summary Table

| Layer | What It Prevents | Tool | Current Status |
|-------|-----------------|------|----------------|
| 0: Determinism | Non-reproducible artifacts | SHA-256, seed-lock | ⚠️ Partial (corpus hashes exist) |
| 1: Cross-validation | Single-LLM blind spots | Multi-model Lean | ❌ Missing |
| 2: Mutation testing | Verifier that passes bad proofs | `scripts/qc-flag/` | ❌ Missing |
| 3: CAS/SMT grounding | Vacuous/tautological proofs | SymPy, Z3 | ❌ Missing |
| 4: Dual-sided proof | Smuggled quantum assumptions | PennyLane, Biopython | ⚠️ Partial (QUBO exists) |
| 5: Claim-state ladder | Unvalidated promotion | Review protocol | ⚠️ Partial (AGENTS.md framework)

## Post-Stability Refinements

These refinements should be incorporated after the core braid/eigensolid formalization is stable. They are cross-references and experimental testbeds — not blockers.

### Turkel et al. TTG — Braid Topology in Twisted Trilayer Graphene

Turkel et al., *Science* 376, 193 (2022), DOI: 10.1126/science.abk1895.
Supplementary materials at: `supplementary/Turkel2022_TTG_SOM.pdf` (externally sourced)

**What it demonstrates:** A physical system (3-layer graphene, two independent twist angles θTM, θBM) that undergoes a Moiré Lattice Reconstruction (MLR) producing exactly three discrete topological defect classes — plaquettes, solitons, and twistons — organized in a honeycomb network at the moiré-of-moiré scale Λ. This is a braid-word structure in a real material.

**Mapping to our formalism:**

| TTG physical quantity | Our braid formalism |
|---|---|
| θTM, θBM (twist angles) | `BraidStateN 3` inter-strand crossing parameters |
| MLR → AtA domains (no AtB) | Eigensolid convergence: `crossStep(s) = s` |
| Λ = a/δθ (moiré of moiré) | Sidon slack / braid word period |
| Plaquette (1.45°) / soliton (1.54°) / twiston (1.68°) | Scar types: stable / soliton / topological defect |
| GSFE energy functional (Eq. S4) | Q16_16 crossing energy (Φ_couch_to_fourier) |
| Relaxation displacement u_ℓ (Eq. S2) | Strand jitter + residue fields |
| Flat band resonance at ν~±2.4 | ∅_scars (scar absence → FAMM gate pass) |
| Disorder reduction at resonance doping | Eigensolid fixed point → uniform LDOS |
| Hartree-Fock correction (4 meV → 19 meV width) | Crossing energy renormalization (many-body → Q16_16) |
| Heterostrain ε_x on solitons (C3 breaking) | Braid word defect: non-trivial braid group element |

**Key insight for formalization:** The MLR does *not* distribute twist-angle error as random noise — it bifurcates into discrete topological classes. This is exactly what a braid representation (Artin B_n) predicts: twist mismatch is absorbed as a word in the braid group, not as a continuous random field. The triple-domain structure is a braid word with exactly 3 defect letters.

**When to apply:**
- After `BraidStateN.lean` and `SpectralN.lean` are stable and proven
- As a test case for n=3 (current work fixes n=8; TTG provides a natural n=3 physical instance)
- The GSFE parameterization (Eq. S4) can be ported as a specific instance of our generalized stacking-fault energy functional
- The Hartree-Fock vs single-particle comparison validates our requirement for interaction-aware crossing energy (no single-particle model reproduces the 19 meV VHS width correctly)

### Cross-Domain Signature Mining

The miner at `infra/sigs/rydberg_miner.py` searches arXiv + CORE API for 1/n-scaling residual papers across 5 domains (Rydberg, superconductor, energy storage, EM, epigenetic). The pipeline works end-to-end: paper search → keyword filter → signature extraction → significance test.

**Current status:** Pipeline is functional but numerical signature values are hash-derived placeholders (the miner finds real papers but can't extract actual measurements from abstracts alone).

**To make it scientifically valid:** Wire an LLM extraction step that reads each paper's full text and extracts real numerical values (quantum defects, H*/Hc2 ratios, breakdown fields, etc.). This is a standalone tool that takes the paper list from the miner and produces genuine signature values. Relevant papers are identified and stored with DOIs for easy lookup.

**Files:**
- `infra/sigs/rydberg_miner.py` — arXiv + CORE search → paper dedup → keyword filter → signature generation
- `scripts/cross_domain_significance.py` — statistical significance test (≥6σ)
- `signatures/cross_domain_signatures.json` — extracted signatures
- `signatures/cross_domain_significance.json` — per-phase σ levels