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SilverSight/docs/PROJECT_MAP.md
allaun 670e7617c3 refactor(rrc): rename corpus250→allFixtures/emitManifold, generic n-dimensional modules, Authentik deploy 
- Rename python/build_corpus250.py → python/build_manifold.py
- Rename emitCorpus250 → emitManifold, corpus250 → allFixtures
- Schema: avm_rrc_corpus250_v1 → avm_rrc_manifold_v1
- Classify.lean now delegates to ClassifyN (generic n-dim module)
- ClassifyN.hashTable8: extracted 119-entry hash table from old Classify
- build_manifold.py now emits ClassifyN.classifyProxy hashTable8 + classifyExact 8
- build_pist_matrices_250.py: added pistMatrixDim constant
- SilverSight docs/AGENTS.md updated for renames
- Research Stack AGENTS.md updated for toolchain references
- Authentik deployed on neon-64gb (port 30001, working)
- cross_domain_significance.py: statistical significance test (all phases <6σ with n=3)
- setup_authentik.sh: fixed image, password, port, key sharing

Build: 3307 jobs, 0 errors (lake build)
2026-06-30 04:54:40 -05:00

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# SilverSight Project Map
**Generated:** 2026-06-23T01:22:57.555788+00:00
**Source repo:** https://github.com/allaunthefox/SilverSight
**Tooling:** `python3 docs/generate_project_map.py` regenerates this file and `docs/PROJECT_MAP.json`.
## 1. Project Overview
- **Total tracked files:** 146
- **Lean files:** 64
- **Python files:** 33
- **Active:** 145 | **Quarantined:** 1 | **Archived:** 0
- **Receipt-boundary files:** 4
## 2. Layer Summary
| Layer | Path | Files | Lean | Python | Active | Quarantined | Archived | Description |
|-------|------|-------|------|--------|--------|-------------|----------|-------------|
| Core | `Core` | 8 | 8 | 0 | 8 | 0 | 0 | Invariant core: no imports except Mathlib; defines Receipt and AVM. |
| CoreFormalism | `formal/CoreFormalism` | 20 | 20 | 0 | 20 | 0 | 0 | Canonical Q16_16, Sidon, braid, and Hachimoji foundations. |
| PVGS_DQ_Bridge | `formal/PVGS_DQ_Bridge` | 9 | 8 | 1 | 9 | 0 | 0 | Photon-varied Gaussian state dual-quaternion bridge. |
| UniversalEncoding | `formal/UniversalEncoding` | 2 | 2 | 0 | 2 | 0 | 0 | Universal math address space and chirality. |
| BindingSite | `formal/BindingSite` | 3 | 3 | 0 | 3 | 0 | 0 | Amino-acid / protein binding sketches. |
| PythonShims | `python` | 13 | 0 | 13 | 13 | 0 | 0 | I/O and feature extraction; no admissibility logic. |
| QUBOShims | `qubo` | 5 | 0 | 5 | 5 | 0 | 0 | QUBO/QAOA/Finsler optimization shims. |
| Tests | `tests` | 5 | 0 | 5 | 4 | 1 | 0 | Verification fixtures. |
| Infrastructure | `.github` | 6 | 0 | 2 | 6 | 0 | 0 | CI workflows and repo scripts. |
| Docs | `docs` | 30 | 0 | 3 | 30 | 0 | 0 | Architecture, contracts, and generated maps. |
## 3. File Inventory
### Core (`Core`)
| File | Module | Build Target | Status | Receipt Boundary | Research-Stack Source | Role |
|------|--------|--------------|--------|------------------|----------------------|------|
| `Core/SilverSight/FixedPoint.lean` | SilverSight.FixedPoint | SilverSight.FixedPoint | active | — | — | — |
| `Core/SilverSight/Semantics/CanalLayout.lean` | SilverSight.Semantics.CanalLayout | SilverSightFormal | active | — | — | — |
| `Core/SilverSight/Semantics/Layout.lean` | SilverSight.Semantics.Layout | SilverSight.Semantics.Layout | active | — | — | — |
| `Core/SilverSight/Semantics/LayoutBridge.lean` | SilverSight.Semantics.LayoutBridge | SilverSight.Semantics.LayoutBridge | active | — | — | — |
| `Core/SilverSight/Semantics/Schema.lean` | SilverSight.Semantics.Schema | SilverSight.Semantics.Schema | active | — | — | — |
| `Core/SilverSight/Semantics/View.lean` | SilverSight.Semantics.View | SilverSight.Semantics.View | active | — | — | — |
| `Core/SilverSight/Semantics/WireFormat.lean` | SilverSight.Semantics.WireFormat | SilverSight.Semantics.WireFormat | active | — | — | — |
| `Core/SilverSightCore.lean` | SilverSightCore | SilverSightCore | active | ✅ | — | Invariant core: Hachimoji states, Receipt, AVM δ, TIC axiom, library interface. |
### CoreFormalism (`formal/CoreFormalism`)
| File | Module | Build Target | Status | Receipt Boundary | Research-Stack Source | Role |
|------|--------|--------------|--------|------------------|----------------------|------|
| `formal/CoreFormalism/Bind.lean` | CoreFormalism.Bind | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/Bind.lean` | Bind/connective primitives used by braid modules. |
| `formal/CoreFormalism/BraidBracket.lean` | CoreFormalism.BraidBracket | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/BraidBracket.lean` | Braid bracket algebra. |
| `formal/CoreFormalism/BraidCross.lean` | CoreFormalism.BraidCross | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/BraidCross.lean` | Braid crossing representation and residuals. |
| `formal/CoreFormalism/BraidEigensolid.lean` | CoreFormalism.BraidEigensolid | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/BraidEigensolid.lean` | Eigensolid fixed-point theory for BraidStorm topology. |
| `formal/CoreFormalism/BraidField.lean` | CoreFormalism.BraidField | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/BraidField.lean` | Field operations on braid states. |
| `formal/CoreFormalism/BraidSpherionBridge.lean` | CoreFormalism.BraidSpherionBridge | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/BraidSpherionBridge.lean` | Braid-to-spherion bridge and topological mixing. |
| `formal/CoreFormalism/BraidStrand.lean` | CoreFormalism.BraidStrand | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/BraidStrand.lean` | 8-strand braid model. |
| `formal/CoreFormalism/ChentsovFinite.lean` | CoreFormalism.ChentsovFinite | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/ChentsovBridge.lean` | Finite Chentsov theorem for the 8-state Hachimoji simplex. |
| `formal/CoreFormalism/DynamicCanal.lean` | CoreFormalism.DynamicCanal | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/DynamicCanal.lean` | Dynamic canal primitives for braid/spherion flow. |
| `formal/CoreFormalism/FixedPoint.lean` | CoreFormalism.FixedPoint | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/FixedPoint.lean` | Canonical Q16_16 fixed-point type; source of truth for cross-language determinism. |
| `formal/CoreFormalism/HachimojiBase.lean` | CoreFormalism.HachimojiBase | SilverSightFormal | active | — | — | Base definitions for the 8-state Hachimoji alphabet. |
| `formal/CoreFormalism/HachimojiBridging.lean` | CoreFormalism.HachimojiBridging | SilverSightFormal | active | — | — | — |
| `formal/CoreFormalism/HachimojiCodec.lean` | CoreFormalism.HachimojiCodec | SilverSightFormal | active | — | — | Hachimoji encode/decode for UTF-8 strings. |
| `formal/CoreFormalism/HachimojiLUT.lean` | CoreFormalism.HachimojiLUT | SilverSightFormal | active | — | — | — |
| `formal/CoreFormalism/HachimojiManifoldAxiom.lean` | CoreFormalism.HachimojiManifoldAxiom | SilverSightFormal | active | — | — | Axioms tying Hachimoji states to statistical manifold structure. |
| `formal/CoreFormalism/InteractionGraphSidon.lean` | CoreFormalism.InteractionGraphSidon | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/InteractionGraphSidon.lean` | Typed interaction graphs, bounded Sidon witness, weak-axis CRT reconstruction. |
| `formal/CoreFormalism/Q16_16Numerics.lean` | CoreFormalism.Q16_16Numerics | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/Q16_16Numerics.lean` | Numeric helpers and bounds over canonical Q16_16. |
| `formal/CoreFormalism/SidonSets.lean` | CoreFormalism.SidonSets | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/SidonSets.lean` | Sidon-set definitions, extremal function, Johnson/Lindström bounds, Singer theorem. |
| `formal/CoreFormalism/SieveLemmas.lean` | CoreFormalism.SieveLemmas | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/SieveLemmas.lean` | Coprime-sieve observers and CRT reconstruction. |
| `formal/CoreFormalism/Tactics.lean` | CoreFormalism.Tactics | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/Tactics.lean` | Shared tactic macros used across CoreFormalism modules. |
### PVGS_DQ_Bridge (`formal/PVGS_DQ_Bridge`)
| File | Module | Build Target | Status | Receipt Boundary | Research-Stack Source | Role |
|------|--------|--------------|--------|------------------|----------------------|------|
| `formal/PVGS_DQ_Bridge/PVGS_DQ_Bridge_fixed.lean` | PVGS_DQ_Bridge.PVGS_DQ_Bridge_fixed | SilverSightFormal | active | ✅ | `0-Core-Formalism/lean/Semantics/Semantics/PVGS_DQ_Bridge.lean` | Master PVGS dual-quaternion bridge receipt. |
| `formal/PVGS_DQ_Bridge/pvgs_receipt_hash.py` | — | — | active | ✅ | `4-Infrastructure/shim/pvgs_receipt_hash.py` | Python helper to hash PVGS receipts. |
| `formal/PVGS_DQ_Bridge/section1_pvgs_params.lean` | PVGS_DQ_Bridge.section1_pvgs_params | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/PVGS_DQ_Bridge.lean` | Photon-varied Gaussian state parameters. |
| `formal/PVGS_DQ_Bridge/section2_hermite_sieve.lean` | PVGS_DQ_Bridge.section2_hermite_sieve | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/PVGS_DQ_Bridge.lean` | Hermite-sieve construction for PVGS. |
| `formal/PVGS_DQ_Bridge/section3_variety_isomorphism.lean` | PVGS_DQ_Bridge.section3_variety_isomorphism | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/PVGS_DQ_Bridge.lean` | Variety isomorphism linking PVGS states. |
| `formal/PVGS_DQ_Bridge/section4_rrc_kernel.lean` | PVGS_DQ_Bridge.section4_rrc_kernel | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/PVGS_DQ_Bridge.lean` | RRC kernel embedded in PVGS bridge. |
| `formal/PVGS_DQ_Bridge/section5_quantum_sensing.lean` | PVGS_DQ_Bridge.section5_quantum_sensing | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/PVGS_DQ_Bridge.lean` | Quantum-sensing bounds within PVGS. |
| `formal/PVGS_DQ_Bridge/section6_effective_bounds.lean` | PVGS_DQ_Bridge.section6_effective_bounds | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/PVGS_DQ_Bridge.lean` | Effective bounds for dual-quaternion operations. |
| `formal/PVGS_DQ_Bridge/section7_master_receipt.lean` | PVGS_DQ_Bridge.section7_master_receipt | SilverSightFormal | active | ✅ | `0-Core-Formalism/lean/Semantics/Semantics/PVGS_DQ_Bridge.lean` | Top-level PVGS receipt assembly. |
### UniversalEncoding (`formal/UniversalEncoding`)
| File | Module | Build Target | Status | Receipt Boundary | Research-Stack Source | Role |
|------|--------|--------------|--------|------------------|----------------------|------|
| `formal/UniversalEncoding/ChiralitySpace.lean` | UniversalEncoding.ChiralitySpace | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/ChiralitySpace.lean` | Chirality classification space. |
| `formal/UniversalEncoding/UniversalMathEncoding.lean` | UniversalEncoding.UniversalMathEncoding | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/UniversalMathEncoding.lean` | 50-token universal math address space. |
### BindingSite (`formal/BindingSite`)
| File | Module | Build Target | Status | Receipt Boundary | Research-Stack Source | Role |
|------|--------|--------------|--------|------------------|----------------------|------|
| `formal/BindingSite/BindingSiteCodec.lean` | BindingSite.BindingSiteCodec | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/BindingSite/BindingSiteCodec.lean` | Binding-site codec for amino-acid/protein sketches. |
| `formal/BindingSite/BindingSiteEntropy.lean` | BindingSite.BindingSiteEntropy | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/BindingSite/BindingSiteEntropy.lean` | Entropy calculations for binding sites. |
| `formal/BindingSite/BindingSiteHachimoji.lean` | BindingSite.BindingSiteHachimoji | SilverSightFormal | active | — | `0-Core-Formalism/lean/Semantics/Semantics/BindingSite/BindingSiteHachimoji.lean` | Binding-site classification into Hachimoji states. |
### PythonShims (`python`)
| File | Module | Build Target | Status | Receipt Boundary | Research-Stack Source | Role |
|------|--------|--------------|--------|------------------|----------------------|------|
| `python/build_manifold.py` | — | — | active | — | — | — |
| `python/build_pist_matrices_250.py` | — | — | active | — | — | — |
| `python/chaos_game.py` | — | — | active | — | `4-Infrastructure/shim/chaos_game_16d.py` | 16D chaos-game basin sampler. |
| `python/expr_tree.py` | — | — | active | — | — | — |
| `python/hachimoji_citation.py` | — | — | active | — | — | — |
| `python/linear_scaling.py` | — | — | active | — | — | — |
| `python/log_prescreen.py` | — | — | active | — | — | — |
| `python/pist_matrix_builder.py` | — | — | active | — | — | — |
| `python/q16_canonical.py` | — | — | active | — | — | Canonical Q16_16 Python reference implementation. |
| `python/sidon_address.py` | — | — | active | — | `4-Infrastructure/shim/sidon_generation_kernel.py` | Sidon label generation for collision-free addressing. |
| `python/spectral_profile.py` | — | — | active | — | `4-Infrastructure/shim/geometric_entropy_explorer.py` | Spectral/entropy profile exploration. |
| `python/test_search.py` | — | — | active | — | — | Search-layer sanity tests. |
| `python/validate_rrc_predictions.py` | — | — | active | — | — | — |
### QUBOShims (`qubo`)
| File | Module | Build Target | Status | Receipt Boundary | Research-Stack Source | Role |
|------|--------|--------------|--------|------------------|----------------------|------|
| `qubo/classical_solver.py` | — | — | active | — | `4-Infrastructure/shim/qubo_highs.py` | HiGHS MIP bridge + TSP assignment relaxation. |
| `qubo/finsler_metric.py` | — | — | active | — | `4-Infrastructure/shim/qaoa_adapter.py` | Finsler-Randers metric and QUBO formulation. |
| `qubo/qaoa_circuit.py` | — | — | active | — | `4-Infrastructure/shim/qaoa_adapter.py` | QAOA circuit generation and classical simulation. |
| `qubo/qubo_builder.py` | — | — | active | — | `4-Infrastructure/shim/qaoa_adapter.py` | QUBO/Ising/Pauli problem builder. |
| `qubo/test_optimize.py` | — | — | active | — | — | Optimization-layer unit tests. |
### Tests (`tests`)
| File | Module | Build Target | Status | Receipt Boundary | Research-Stack Source | Role |
|------|--------|--------------|--------|------------------|----------------------|------|
| `tests/quarantine/q16_roundtrip_test.legacy.py` | — | — | quarantined | — | `tests/q16_roundtrip_test.py` | Archived C <-> Python roundtrip test; waiting on C bridge. |
| `tests/test_kepler.py` | — | — | active | — | — | — |
| `tests/test_log_prescreen.py` | — | — | active | — | — | — |
| `tests/test_q16_canonical.py` | — | — | active | — | — | Canonical Q16_16 unit tests. |
| `tests/test_q16_roundtrip.py` | — | — | active | — | — | — |
### Infrastructure (`.github`)
| File | Module | Build Target | Status | Receipt Boundary | Research-Stack Source | Role |
|------|--------|--------------|--------|------------------|----------------------|------|
| `.github/scripts/check_doc_sync.py` | — | — | active | — | — | — |
| `.github/scripts/glossary_lint.py` | — | — | active | — | — | — |
| `.github/workflows/doc-sync.yml` | — | — | active | — | — | — |
| `.github/workflows/lean-check.yml` | — | — | active | — | — | — |
| `.github/workflows/python-check.yml` | — | — | active | — | — | — |
| `.github/workflows/q16-roundtrip.yml` | — | — | active | — | — | — |
### Docs (`docs`)
| File | Module | Build Target | Status | Receipt Boundary | Research-Stack Source | Role |
|------|--------|--------------|--------|------------------|----------------------|------|
| `docs/ARCHITECTURE.md` | — | — | active | — | — | — |
| `docs/FINITE_INFINITY_DUALITY.md` | — | — | active | — | — | — |
| `docs/GLOSSARY.md` | — | — | active | — | — | — |
| `docs/GLOSSARY_ALLOWLIST.md` | — | — | active | — | — | — |
| `docs/GODEL_BOUNDARY_AND_CLASSIFIERS.md` | — | — | active | — | — | — |
| `docs/LIBRARY_MANIFEST.md` | — | — | active | — | — | — |
| `docs/PROJECT_MAP.json` | — | — | active | — | — | — |
| `docs/PROJECT_MAP.md` | — | — | active | — | — | — |
| `docs/RRC_PLACEMENT.md` | — | — | active | — | — | — |
| `docs/RRC_REFACTOR_READINESS.md` | — | — | active | — | — | — |
| `docs/SYMBOLIC_REGRESSION_DESIGN.md` | — | — | active | — | — | — |
| `docs/TESTING.md` | — | — | active | — | — | — |
| `docs/build_logs/2026-06-21_session_build_baseline.md` | — | — | active | — | — | — |
| `docs/build_logs/2026-06-22_session_bmcte_hachimoji_bridge.md` | — | — | active | — | — | — |
| `docs/build_logs/2026-06-22_session_hachimoji_citation.md` | — | — | active | — | — | — |
| `docs/build_logs/2026-06-22_session_hachimoji_lut_bridge.md` | — | — | active | — | — | — |
| `docs/concept_map/concept_map_receipt.json` | — | — | active | — | — | — |
| `docs/concept_map/drive_concept_map.jsonl` | — | — | active | — | — | — |
| `docs/concept_map/markdown_concept_map.jsonl` | — | — | active | — | — | — |
| `docs/generate_porting_candidates.py` | — | — | active | — | — | — |
| `docs/generate_project_map.py` | — | — | active | — | — | — |
| `docs/generate_research_stack_usage_map.py` | — | — | active | — | — | — |
| `docs/hachimoji_torsor_consequences.md` | — | — | active | — | — | — |
| `docs/research_stack_porting_candidates.md` | — | — | active | — | — | — |
| `docs/research_stack_usage_graph.dot` | — | — | active | — | — | — |
| `docs/research_stack_usage_graph.json` | — | — | active | — | — | — |
| `docs/research_stack_usage_graph.md` | — | — | active | — | — | — |
| `docs/research_stack_usage_graph.svg` | — | — | active | — | — | — |
| `docs/research_stack_usage_graph_thumb.png` | — | — | active | — | — | — |
| `docs/reviews/BOSONIC_MONTE_CARLO_PIPELINE_REVIEW.md` | — | — | active | — | — | — |
## 4. Key Build & Test Commands
```bash
# Lean
lake build
lake build SilverSightFormal
lake build CoreFormalism.SidonSets
# Python
python3 -m py_compile python/*.py qubo/*.py tests/*.py .github/scripts/*.py
pytest tests/ python/ qubo/ -v
# Docs
python3 .github/scripts/glossary_lint.py
python3 docs/generate_project_map.py
```
## 5. Dependency Rules
- `Core/SilverSightCore.lean` imports nothing except Mathlib.
- Every library may import `Core/` and Mathlib, but **no library may import another library**.
- `formal/CoreFormalism/` is the canonical foundation; higher `formal/` directories may import `CoreFormalism/` but not each other.
- `python/` and `qubo/` are I/O shims; they may not contain admissibility logic.
- The `Receipt` is the only Core/library boundary.
## 6. Legend
| Field | Meaning |
|-------|---------|
| `active` | Builds and is part of the current surface. |
| `quarantined` | In `tests/quarantine/` or marked broken; not part of CI. |
| `archived` | Legacy filename; kept for reference only. |
| `Receipt Boundary` | File produces or consumes `Receipt` values across the Core/library boundary. |
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