Research-Stack/6-Documentation/docs/WORKTREE_POLISH_2026-04-29.md

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# Worktree Polish - 2026-04-29
## Completed
- Removed generated runtime junk from the checkout surface:
- `__pycache__/`
- `*.pyc`
- `*.pyo`
- `*.tmp`
- `*.bak`
- `*.pid`
- `.DS_Store`
- Normalized trailing whitespace / CRLF issues in the files reported by `git diff --check`.
- Quarantined local-only heavy artifacts outside the repo at:
`/home/allaun/Documents/DeleteMe/research-stack-worktree-quarantine-20260429-051848`
- Added `.gitignore` coverage for local-only generated artifacts, refill archives, ISO images, pid files, and the local `scripts/venv_unsloth/` virtualenv.
- Removed stale Git object garbage from `.git/objects/pack`.
## Quarantined Items
- `artifacts/gdrive_refill/`
- `CompressionApproachViaTopology/`
- `String-Star-Manifold/`
- `String-Star-Manifold-v1.0.0-omega.zip`
- `MATH_MODEL_MAP.tsv.perfect_balance_backup_2026-04-27.gz`
- `data/cachyos-desktop-linux-260426.iso`
- `scripts/venv_unsloth/`
## Verification
- `git diff --check`: clean.
- Generated junk scan for cache, bytecode, temp, backup, pid, and `.DS_Store` files: clean.
- `git count-objects -vH`: `garbage: 0`, `size-garbage: 0 bytes`.
## Remaining Decision Gates
- The branch is still intentionally dirty and needs a semantic review pass before commit:
- 195 modified tracked files.
- 14 deleted tracked files.
- 151 untracked source/data/doc files.
- Do not bulk-restore or bulk-delete those remaining files without deciding whether each group is source, generated output, archived evidence, or obsolete surface.